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Jacob West-Roberts

Hi, I'm Oshiomah P. Oyageshio

Interdisciplinary Scientist

I am a 6th Year PhD Candidate at UCDavis in the Population Biology Department supervised by Dr. Brenna Henn.

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Curriculum Vitae

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Education

2020 - 2026

Ph.D. in Population Biology

University of California Davis, CA

2018 - 2020

M.Sc. in Ecology & Evolutionary Biology

University of California Los Angeles, CA

2014 - 2018

B.Sc. in Biochemistry & Molecular Biology

University of Massachusetts Amherst, MA

Professional Experience

Jun 2024 – Aug 2024

Genomics Data Scientist (PhD Intern)

Regeneron Genetics Center, Tarrytown, NY

  • Analyzed large-scale multiomic datasets using advanced bioinformatics tools and statistical models
  • Performed proteomic deconvolution of UK Biobank data to identify immune cell-type signatures in autoimmune diseases
  • Created custom phenotypes for GWAS meta-analyses by integrating epidemiological and immunological data
  • Conducted GWAS to explore genetic mechanisms in inflammatory conditions
  • Presented results to a multidisciplinary team of researchers and clinicians
Sept 2020 – Present

Graduate Research Associate

University of California Davis

  • Built tuberculosis case-control assignment algorithms from 50+ clinical variables
  • Applied Random Forest and Logistic Regression to predict TB progression from 1000+ patient samples
  • Annotated pathogenic variants for the CAAPA Consortium
  • Performed single-cell RNA-seq on PBMCs from TB cohort
Sept 2023 – Present

Teaching Assistant: Computational Genomics

University of California Davis

  • Facilitated advanced genetics course with 25 PhD students
  • Developed instructional materials and hosted weekly coding sessions
Sept 2022 – Apr 2023

Visiting Scholar

Stellenbosch University, Cape Town, South Africa

  • Led a 2-month fieldwork expedition collecting blood, saliva, and biometric data
  • Developed data harmonization pipelines for accurate longitudinal tracking

Technical Proficiencies

Programming Languages

Python
Bash
R
Markdown
C++
Linux Shell Scripting
UNIX

Fields of Expertise

Bioinformatics
Computational Biology
Evolutionary Genomics
Statistical Genetics

Selected Publications

Strong effect of demographic changes on Tuberculosis susceptibility in South Africa

Oyageshio, O. P., Myrick, J. W., Saayman, J., van der Westhuizen, L., Al-Hindi, D. R., Reynolds, A. W., ... & Henn, B. M.

PLOS Global Public Health (2024), 4(7), e0002643.

Epidemiological correlates of overweight and obesity in the Northern Cape Province, South Africa

Smith, M. H., Myrick, J. W., Oyageshio, O.P., Uren, C., Saayman, J., Boolay, S., ... & Reynolds, A. W.

PeerJ (2023), 11, e14723.