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Jacob West-Roberts

Oshiomah P. Oyageshio

Bioinformatics & Population Genetics

I am a 6th Year PhD Candidate at UCDavis in the Population Biology Department supervised by Dr. Brenna Henn.

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Curriculum Vitae

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Education

2020 - 2026

Ph.D. in Population Biology

University of California Davis, CA

2018 - 2020

M.Sc. in Ecology & Evolutionary Biology

University of California Los Angeles, CA

2014 - 2018

B.Sc. in Biochemistry & Molecular Biology

University of Massachusetts Amherst, MA

Professional Experience

Jun 2024 – Aug 2024

Genomics Data Scientist (PhD Intern)

Regeneron Genetics Center, Tarrytown, NY

  • Analyzed large-scale multiomic datasets using advanced bioinformatics tools and statistical models
  • Performed proteomic deconvolution of UK Biobank data to identify immune cell-type signatures in autoimmune diseases
  • Created custom phenotypes for GWAS meta-analyses by integrating epidemiological and immunological data
  • Conducted GWAS to explore genetic mechanisms in inflammatory conditions
  • Presented results to a multidisciplinary team of researchers and clinicians
Sept 2020 – Present

Graduate Research Associate

University of California Davis

  • Built tuberculosis case-control assignment algorithms from 50+ clinical variables
  • Applied Random Forest and Logistic Regression to predict TB progression from 1000+ patient samples
  • Annotated pathogenic variants for the CAAPA Consortium
  • Performed single-cell RNA-seq on PBMCs from TB cohort
Sept 2023 – Present

Teaching Assistant: Computational Genomics

University of California Davis

  • Facilitated advanced genetics course with 25 PhD students
  • Developed instructional materials and hosted weekly coding sessions
Sept 2022 – Apr 2023

Visiting Scholar

Stellenbosch University, Cape Town, South Africa

  • Led a 2-month fieldwork expedition collecting blood, saliva, and biometric data
  • Developed data harmonization pipelines for accurate longitudinal tracking

Technical Proficiencies

Programming Languages

Python
Bash
R
Markdown
C++
Linux Shell Scripting
UNIX

Fields of Expertise

Bioinformatics
Computational Biology
Evolutionary Genomics
Statistical Genetics